Basic Information
Locus ID:
gene-BS78_01G513200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 53888805 | 53892226 | - | gene-BS78_01G513200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 72,899.80 Da | 68.09 | 63.33 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 595 | 635 | 1.4221E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 593 | 640 | 9.6E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 595 | 641 | 2.67E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 572 | 646 | 2.8E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 596 | 635 | 10.394352 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 364 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022685551.1 | uncharacterized protein LOC101779219 [Setaria italica] | 0 |
| TrEMBL | A0A0A9DTT5 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology