Basic Information
Locus ID:
gene-BS78_01G512100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 53823081 | 53827404 | - | gene-BS78_01G512100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 50,832.09 Da | 37.75 | 72.16 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 174 | 454 | 2.03423E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 255 | 291 | 0.057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 206 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 213 | 248 | 4.6E-8 | IPR001680 |
| Pfam | PF08513 | LisH | 13 | 37 | 6.1E-5 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 180 | 454 | 2.04E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 307 | 454 | 2.2E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 155 | 305 | 1.1E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 374 | 413 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 248 | 9.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 330 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 454 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 373 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 0.077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 1.7E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 422 | 454 | 9.256512 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 216 | 257 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 216 | 252 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 422 | 454 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 13 | 41 | 8.323781 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 235 | 249 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 441 | 454 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 193 | 207 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 235 | 249 | 3.1E-6 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_012698060.1 | transcriptional corepressor LEUNIG-like isoform X1 [Setaria italica] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TD56 | LisH domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G576600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.5029 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0230570, gene-QOZ80_3BG0297310 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G512100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G000290, Chr07G000300 |