Basic Information
Locus ID:
gene-BS78_01G458200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 49789466 | 49791178 | - | gene-BS78_01G458200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 48,952.43 Da | 46.06 | 90.24 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 346 | 369 | 0.039 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 72 | 119 | 8.7E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 268 | 317 | 6.9E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 46 | 70 | 0.017 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 177 | 197 | 0.015 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 10 | 131 | 1.9E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 201 | 300 | 1.1E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 132 | 200 | 1.4E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 301 | 453 | 8.3E-22 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 346 | 369 | 2.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 240 | 270 | 0.0029 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 74 | 107 | 1.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 271 | 298 | 2.9E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 72 | 106 | 10.259834 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 238 | 272 | 10.533867 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66500.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_004968836.1 | pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Setaria italica] | 0 |
| Q9FJY9 | Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E38 PE=2 SV=1 | 0 | |
| TrEMBL | K3XPJ7 | Pentatricopeptide repeat-containing protein OS=Setaria italica OX=4555 GN=101765979 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24052 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208140 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715219 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1305.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003984m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g30230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g015650.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0078 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2372 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0068400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0292580.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024169, gene-QYE76_025379, gene-QYE76_072021 |
| Poaceae | Oryza coarctata | 1 | Oco01G011340 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g33070.1, LOC_Os03g42650.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G458200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203294, Pt_Chr0700218 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G011860, Chr12G024800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G504300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG045390 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G322700.1.cds1, TraesCS3B02G342936.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb413360_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52402 |
| Salicaceae | Populus euphratica | 1 | populus_peu23603 |