Basic Information
Locus ID:
gene-BS78_01G422800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 46953498 | 46955170 | + | gene-BS78_01G422800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 47,000.92 Da | 43.01 | 103.86 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 33 | 74 | 2.89339E-23 | - |
| Pfam | PF04564 | U-box domain | 29 | 100 | 3.8E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 19 | 103 | 1.77E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 206 | 420 | 4.8E-15 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 125 | 423 | 9.3E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 101 | 9.9E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 32 | 95 | 1.9E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 28 | 102 | 40.019714 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004985053.1 | U-box domain-containing protein 21 [Setaria italica] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | K4AA08 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101783635 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology