Basic Information
Locus ID:
gene-BS78_01G414900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 46296668 | 46304742 | + | gene-BS78_01G414900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 124,817.13 Da | 42.40 | 79.33 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 947 | 0.0084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 486 | 9.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 830 | 1092 | 1.19E-34 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 340 | 662 | 1.28E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 815 | 1102 | 5.8E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 568 | 3.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 569 | 682 | 2.3E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 824 | 862 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 998 | 1039 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 5.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.17 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 0.86 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.3E-13 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 947 | 9.915599 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 947 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 598 | 629 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.311394 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1093 | 1129 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8I5I9 | TOPLESS OS=Panicum hallii OX=206008 GN=PAHAL_9G528200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology