Basic Information
Locus ID:
gene-BS78_01G414700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 46281865 | 46286699 | + | gene-BS78_01G414700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 44,270.19 Da | 59.06 | 59.73 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 323 | 363 | 2.0622E-27 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 322 | 368 | 4.8E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 369 | 1.21E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 373 | 3.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 324 | 362 | 2.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 363 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 400 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001333932.1 | probable E3 ubiquitin-protein ligase LUL2 [Zea mays] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A096UDI7 | RING-type E3 ubiquitin transferase OS=Zea mays OX=4577 GN=103633744 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology