Basic Information
Locus ID:
gene-BS78_01G406000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 45613133 | 45619475 | - | gene-BS78_01G406000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 42,741.35 Da | 47.85 | 76.53 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 314 | 362 | 3.4E-12 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 312 | 368 | 2.76E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 255 | 4.71E-22 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 287 | 2.5E-12 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 296 | 375 | 1.4E-16 | - |
| SMART | SM00326 | SH3_2 | 310 | 365 | 6.2E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 307 | 366 | 20.361427 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 194 | - | - |
| Coils | Coil | Coil | 190 | 224 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_021306684.1 | SH3 domain-containing protein 2 [Sorghum bicolor] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | C5WQ41 | SH3 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G425800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology