Basic Information
Locus ID:
gene-BS78_01G401000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 45243248 | 45250752 | - | gene-BS78_01G401000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 83,264.57 Da | 48.90 | 92.97 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 344 | 386 | 7.02009E-27 | - |
| Pfam | PF04564 | U-box domain | 340 | 410 | 1.8E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 466 | 504 | 1.8E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 548 | 586 | 3.2E-9 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 330 | 415 | 6.25E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 438 | 711 | 9.0E-48 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 337 | 413 | 3.9E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 575 | 720 | 2.4E-19 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 420 | 572 | 2.3E-32 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 98 | 210 | 6.9E-9 | IPR036537 |
| SMART | SM00185 | arm_5 | 423 | 463 | 25.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 506 | 546 | 5.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 673 | 713 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 465 | 505 | 1.1E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 547 | 587 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 588 | 628 | 23.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 343 | 406 | 2.0E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 339 | 413 | 45.804802 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 476 | 518 | 11.3924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 558 | 600 | 9.4324 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7CEF0 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G524000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology