Basic Information
Locus ID:
gene-BS78_01G394400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Pentatricopeptide repeat domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 44834658 | 44838462 | + | gene-BS78_01G394400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.32 | 64,276.47 Da | 31.99 | 97.95 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 318 | 360 | 1.1E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 420 | 465 | 2.6E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 183 | 210 | 2.9E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 493 | 516 | 0.0078 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 258 | 285 | 0.0032 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 155 | 181 | 7.7E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 391 | 412 | 0.002 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 288 | 312 | 2.2E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 559 | 584 | 1.2 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 6 | 135 | 4.4E-16 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 137 | 237 | 1.4E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 387 | 585 | 4.3E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 238 | 319 | 3.0E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 320 | 369 | 1.5E-6 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 320 | 352 | 2.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 456 | 482 | 3.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 288 | 319 | 3.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 155 | 183 | 1.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 493 | 516 | 9.5E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 421 | 454 | 1.0E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 183 | 209 | 4.3E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 181 | 211 | 9.832344 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 286 | 320 | 10.369448 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 150 | 180 | 8.70333 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 418 | 452 | 10.303679 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 255 | 285 | 9.04313 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37310.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_039825475.1 | pentatricopeptide repeat-containing protein At2g37310 [Panicum virgatum] | 0 |
| Q9ZUT5 | Pentatricopeptide repeat-containing protein At2g37310 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E49 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0MXZ9 | Pentatricopeptide repeat-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG690800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32078 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3179 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018961 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15521, Sbi_jg56329 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26790 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006585 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02046, Sgl07200 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003035, gene:ENSEOMG00000031678 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0002350, CQ.Regalona.r1.3BG0002500 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30271600, pistato.v30272050 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G007140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112908 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.337.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G21384 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G37310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016362m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g007490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1252 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1281 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19810 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g29880 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1340 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006366 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.4668 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243790, gene-QOZ80_3BG0284450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0386060.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068876 |
| Poaceae | Oryza coarctata | 1 | Oco05G010170 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G394400 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G031610, Chr04G008280, Chr07G003350, Chr12G008070 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G353600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG014230, gene_TRIDC4BG035850 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G104600.1.cds1, TraesCS4B02G199300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb012970_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-54043, nbis-gene-56787 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3875 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02720 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1613, evm.TU.Scaffold_1_RagTag.1616 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5319, nbisL1-mrna-5416 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4604 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3859 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.240 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017260 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18768, nbisL1-mrna-18770 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-468, nbisL1-mrna-472 |
| Salicaceae | Populus euphratica | 1 | populus_peu12536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630133 |
| Solanaceae | Solanum chilense | 1 | SOLCI002775000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031192 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_490 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0324 |
| Zosteraceae | Zostera marina | 1 | Zosma01g17040.v3.1 |