Basic Information
Locus ID:
gene-BS78_01G363000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 42022646 | 42024503 | - | gene-BS78_01G363000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 47,960.70 Da | 53.11 | 56.48 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 213 | 254 | 6.25516E-10 | - |
| Pfam | PF13696 | Zinc knuckle | 161 | 181 | 3.8E-10 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 81 | 1.4E-17 | IPR014891 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 150 | 185 | 6.54E-5 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 281 | 6.28E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 210 | 284 | 8.6E-11 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 84 | 4.0E-17 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 157 | 209 | 1.7E-12 | - |
| SMART | SM01180 | DWNN_2 | 3 | 82 | 1.7E-30 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 82 | 14.568103 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 121 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 0 |
| RefSeq | XP_034570947.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MTG6 | DWNN domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS7104 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology