Basic Information
Locus ID:
gene-BS78_01G360700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 41841171 | 41845431 | - | gene-BS78_01G360700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 50,663.52 Da | 29.60 | 88.54 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00610 | OAT_like | 48 | 462 | 1.01662E-154 | IPR005814 |
| Pfam | PF00202 | Aminotransferase class-III | 67 | 460 | 7.0E-91 | IPR005814 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 59 | 463 | 5.99E-120 | IPR015424 |
| Gene3D | G3DSA:3.40.640.10 | - | 102 | 359 | 3.8E-135 | IPR015421 |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 67 | 462 | 3.8E-135 | IPR015422 |
| PIRSF | PIRSF000521 | Transaminase_4ab_Lys_Orn | 166 | 465 | 4.4E-28 | IPR005814 |
| PIRSF | PIRSF000521 | Transaminase_4ab_Lys_Orn | 11 | 171 | 1.2E-8 | IPR005814 |
| ProSitePatterns | PS00600 | Aminotransferases class-III pyridoxal-phosphate attachment site. | 276 | 314 | - | IPR005814 |
Gene Ontology
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00280 (Valine, leucine and isoleucine degradation)
map00280 (Valine, leucine and isoleucine degradation)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08860.1 | PYRIMIDINE 4. Encodes a protein that is predicted to have beta-alanine aminotransferase activity. | 0 |
| RefSeq | XP_025791468.1 | alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial-like [Panicum hallii] | 0 |
| Q9SR86 | Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g08860 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3IQU7 | Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial OS=Panicum hallii OX=206008 GN=PAHAL_9G473600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20109, jg3197, jg38040, jg38041 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14561, gene_7729 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003125, Ah031419 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g076880, BVRB_7g157660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15728, Sbi_jg2241, Sbi_jg34267, Sbi_jg56524 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13748, Seu_jg2514 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001819, GOSA_00005960 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl14430, Sgl15112, Sgl19602, Sgl20229, Sgl71026, Sgl74617 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000006460, gene:ENSEOMG00000006975 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0011280, CQ.Regalona.r1.5BG0011660 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30173170, pistato.v30197830, pistato.v30197850 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G01734, Ag5G01647 |
| Arecaceae | Cocos nucifera | 4 | COCNU_03G006370, COCNU_04G004120, COCNU_04G012960 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700724, gene-LOC103702094, gene-LOC103714394 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1734.V1.1, AsparagusV1_07.422.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G16798, Ftri17G31114 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G38400.2, AT3G08860.1, AT4G39660.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016589m.g.v1.0, Thhalv10025073m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g20720.v2.2, Sp7g36230.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g015050.2N, BniB05g000370.2N, BniB06g006170.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq04G0908, Ceq06G1792, Ceq08G0926, Ceq08G1788 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl04G1028, Cgl06G1857, Cgl08G0945, Cgl08G1849 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18170, gene.Cymno11g06430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0709s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g02570, gene.Thate04g06810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-11964, nbisL1-mrna-4304, nbisL1-mrna-4371 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.914, evm.TU.LG02.725 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002624, Pov_00014481, Pov_00025545 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G03610, Lb2G09579, Lb2G11194, Lb2G11909 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.3711, AH01.4820, AH05.2049, BH01.4062, BH01.4751 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_3AG0235470, gene-QOZ80_3AG0247560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0071400.1, HORVU.MOREX.r3.4HG0403790.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_014163, gene-QYE76_017686, gene-QYE76_068114 ... |
| Poaceae | Oryza coarctata | 7 | Oco05G004190, Oco05G013110, Oco06G004240, Oco06G013360 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g07570.4, LOC_Os03g21960.1, LOC_Os05g39770.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G360700, gene-BS78_01G465000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0101310, Pt_Chr0102685, Pt_Chr0604646 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G018520, Chr01G036080, Chr04G010930, Chr0G008120 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G482800, Tel4E01G306300, Tel4E01G483000 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG044340, gene_TRIDC1BG050240 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G299100.1, TraesCS1B02G308900.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb005550_P001, Zm00001eb016230_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14230, nbis-gene-1631, nbis-gene-4353 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1241, Zma_g27013, Zma_g4327 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2150, evm.TU.LG14.1326 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g08990, gene.Posoc04g14600, gene.Posoc07g13350 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5659, nbisL1-mrna-962 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6081, nbisL1-mrna-7131 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2306 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000016l.747, evm.TU.utg000019l.618 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002061, Maker00017024 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4908, nbisL1-mrna-6099 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13827, nbisL1-mrna-1733 |
| Salicaceae | Populus euphratica | 4 | populus_peu11493, populus_peu22988, populus_peu25303 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606756, gene-LOC132613893 |
| Solanaceae | Solanum chilense | 1 | SOLCI004127500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017796, gene-LOC107032369 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_7475, gene_7550 |
| Tamaricaceae | Tamarix chinensis | 2 | TC00000084, TC07G1043 |
| Zosteraceae | Zostera marina | 2 | Zosma01g17640.v3.1, Zosma06g04130.v3.1 |