Basic Information
Locus ID:
gene-BS78_01G360300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 41807667 | 41808870 | - | gene-BS78_01G360300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 19,625.65 Da | 60.62 | 97.47 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 112 | 155 | 3.18095E-16 | - |
| Pfam | PF13639 | Ring finger domain | 112 | 155 | 2.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 107 | 159 | 1.27E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 159 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 154 | 5.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 155 | 12.858103 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002467888.1 | RING-H2 finger protein ATL2 [Sorghum bicolor] | 0 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 0 | |
| TrEMBL | C5X0R2 | RING-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G378500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology