Basic Information
Locus ID:
gene-BS78_01G359000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 41705679 | 41713477 | + | gene-BS78_01G359000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 53,681.75 Da | 48.49 | 86.27 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 181 | 209 | 3.4E-6 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 52 | 104 | 1.8E-13 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 276 | 4.4E-9 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 3.45E-52 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 375 | 9.96E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 147 | 1.4E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 148 | 285 | 3.5E-28 | IPR036770 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.0E-4 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 367 | 0.0012 | IPR001841 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.9E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 1.4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0076 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 6.0E-6 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 368 | 9.877997 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.73111 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.40734 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.629499 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.699804 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.613973 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.36565 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.205854 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 13.14349 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.277257 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.620211 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 3.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 3.2E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_004954184.1 | probable E3 ubiquitin-protein ligase XBOS32 [Setaria italica] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | K3YRW7 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101769393 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology