Basic Information
Locus ID:
gene-BS78_01G355300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 41392327 | 41395322 | + | gene-BS78_01G355300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 29,445.55 Da | 42.06 | 51.95 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 19 | 93 | 3.6E-20 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 195 | 249 | 3.8E-12 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 146 | 190 | 6.9E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 84 | 141 | 7.32E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 198 | 4.12E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 82 | 1.44E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 212 | 1.0E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 217 | 253 | 1.1E-9 | - |
| SMART | SM00184 | ring_2 | 148 | 190 | 9.4E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 83 | 147 | 33.305843 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 12 | 81 | 25.217728 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 11.589345 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_022679116.1 | E3 ubiquitin-protein ligase SRFP1 isoform X1 [Setaria italica] | 0 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 0 | |
| TrEMBL | C5WZT8 | RING finger and CHY zinc finger domain-containing protein 1 OS=Sorghum bicolor OX=4558 GN=SORBI_3001G373100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology