Basic Information
Locus ID:
gene-BS78_01G351400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 41149914 | 41153307 | + | gene-BS78_01G351400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 34,289.93 Da | 43.96 | 70.96 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 168 | 296 | 2.23115E-63 | - |
| CDD | cd16571 | RING-HC_SIAHs | 52 | 90 | 7.47697E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 96 | 295 | 2.0E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 107 | 299 | 1.37E-47 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 95 | 2.3E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 106 | 3.3E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 107 | 161 | 8.1E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 162 | 295 | 3.1E-38 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 90 | 9.140347 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 107 | 167 | 14.330566 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_004984335.1 | E3 ubiquitin-protein ligase SINAT3 [Setaria italica] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | K4AD38 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101778124 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology