Basic Information
Locus ID:
gene-BS78_01G345500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 40635885 | 40642565 | - | gene-BS78_01G345500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 65,738.58 Da | 45.36 | 83.72 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 138 | 400 | 4.8694E-130 | - |
| Pfam | PF00069 | Protein kinase domain | 139 | 401 | 4.5E-68 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 137 | 460 | 5.53E-82 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 429 | 583 | 5.65E-16 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 135 | 224 | 1.4E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 419 | 510 | 3.1E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 225 | 417 | 5.2E-57 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 426 | 580 | 3.1E-15 | - |
| SMART | SM00220 | serkin_6 | 139 | 401 | 3.1E-95 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 139 | 401 | 48.951 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 263 | 275 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 145 | 171 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 91 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41140.1 | CDPK-related kinase 1. Encodes CDPK-related kinase 1 (CRK1). | 0 |
| RefSeq | XP_002467812.1 | calcium/calmodulin-dependent serine/threonine-protein kinase 1 [Sorghum bicolor] | 0 |
| Q10KY3 | Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CAMK1 PE=1 SV=1 | 0 | |
| TrEMBL | C5WYR4 | Protein kinase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G361300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology