Basic Information
Locus ID:
gene-BS78_01G337200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 39959330 | 39960139 | + | gene-BS78_01G337200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 27,217.38 Da | 44.26 | 73.16 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 98 | 141 | 1.04759E-16 | - |
| Pfam | PF13639 | Ring finger domain | 98 | 141 | 9.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 149 | 1.54E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 151 | 3.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 99 | 140 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 99 | 141 | 12.326995 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 269 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_039785769.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811MB92 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology