Basic Information
Locus ID:
gene-BS78_01G336900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 39910982 | 39921754 | - | gene-BS78_01G336900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 81,778.22 Da | 40.94 | 84.11 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 458 | 726 | 6.0E-35 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 152 | 210 | 1.3E-11 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 63 | 103 | 1.3E-7 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 439 | 728 | 1.4E-63 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 284 | 6.12E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 62 | 297 | 1.2E-48 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 534 | 748 | 1.1E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 418 | 533 | 7.1E-23 | - |
| SMART | SM00369 | LRR_typ_2 | 175 | 197 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 128 | 157 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 221 | 18.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 177 | 198 | 7.196008 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 456 | 729 | 31.537914 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 462 | 485 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 327 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_039785771.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Panicum virgatum] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0NWA9 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG395800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology