Basic Information
Locus ID:
gene-BS78_01G320700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 38494042 | 38497647 | + | gene-BS78_01G320700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.90 | 58,225.81 Da | 39.85 | 77.73 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 466 | 493 | 4.28052E-5 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 36 | 82 | 6.4E-10 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 306 | 363 | 1.5E-11 | IPR025287 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 414 | 469 | 1.5E-5 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 470 | 506 | 4.3E-8 | - |
| SMART | SM00181 | egf_5 | 415 | 465 | 5.7 | IPR000742 |
| SMART | SM00179 | egfca_6 | 466 | 504 | 5.4E-6 | IPR001881 |
| SMART | SM00181 | egf_5 | 248 | 295 | 31.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 469 | 504 | 12.0 | IPR000742 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 466 | 489 | - | IPR018097 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21210.1 | wall associated kinase 4. cell wall-associated ser/thr kinase involved in cell elongation and lateral root development | 0 |
| RefSeq | XP_025795388.1 | wall-associated receptor kinase 3-like [Panicum hallii] | 0 |
| Q9LMN6 | Wall-associated receptor kinase 4 OS=Arabidopsis thaliana OX=3702 GN=WAK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835F5T8 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_018316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH01.3275, BH01.3663, CH01.3846, CH01.3847, CH02.1873 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0531690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_059598, gene-QYE76_060264 |
| Poaceae | Oryza coarctata | 3 | Oco01G010200, Oco05G028540, Oco06G029580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105226, Pt_Chr0106279 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G818100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052310, gene_TRIDC5BG078330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G347600.1, TraesCS5B02G526000.1 ... |