Basic Information
Locus ID:
gene-BS78_01G319300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 38385796 | 38390188 | + | gene-BS78_01G319300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 29,806.36 Da | 58.29 | 99.74 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 45 | 78 | 2.2E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 102 | 1.13E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 135 | 9.5E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 45 | 100 | 9.700961 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 64 | 73 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 156 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021307472.1 | RING finger protein 222 [Sorghum bicolor] | 0 |
| TrEMBL | C5WWH5 | RING-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G333200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology