Basic Information
Locus ID:
gene-BS78_01G309600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 37467368 | 37471812 | + | gene-BS78_01G309600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 55,717.86 Da | 50.57 | 81.50 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.029 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 188 | 249 | 8.0E-9 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 4.4E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 384 | 4.12E-8 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 282 | 2.58E-50 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 153 | 281 | 3.3E-21 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 392 | 3.5E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 148 | 3.6E-34 | IPR036770 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 228 | 260 | 9.5E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 185 | 214 | 3.5E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.41 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 8.6E-7 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 185 | 217 | 11.46076 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 15.38713 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 185 | 214 | 10.789545 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.118069 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 228 | 254 | 10.948734 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.81647 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 228 | 254 | 10.97998 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 14.265156 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 377 | 9.74522 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 342 | 351 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 201 | 215 | 1.5E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 45 | 60 | 1.5E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 497 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_002465047.1 | probable E3 ubiquitin-protein ligase XBOS33 [Sorghum bicolor] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | C5WUM2 | RING-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G322000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology