Basic Information
Locus ID:
gene-BS78_01G300300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 36635002 | 36641479 | - | gene-BS78_01G300300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 61,225.66 Da | 45.51 | 81.90 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 75 | 332 | 8.92718E-122 | - |
| CDD | cd00051 | EFh | 452 | 512 | 3.54083E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 451 | 512 | 5.6E-10 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 76 | 333 | 2.9E-69 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 65 | 351 | 7.96E-81 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 357 | 516 | 1.46E-30 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 65 | 157 | 3.4E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 158 | 340 | 3.1E-54 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 359 | 511 | 1.8E-42 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 351 | 442 | 1.8E-42 | - |
| SMART | SM00054 | efh_1 | 380 | 408 | 2.8 | IPR002048 |
| SMART | SM00054 | efh_1 | 452 | 480 | 0.014 | IPR002048 |
| SMART | SM00220 | serkin_6 | 76 | 333 | 9.7E-86 | IPR000719 |
| SMART | SM00054 | efh_1 | 486 | 514 | 1.9 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 448 | 483 | 12.532831 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 76 | 333 | 45.714317 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 376 | 411 | 9.966455 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 82 | 109 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 461 | 473 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 195 | 207 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35310.1 | calmodulin-domain protein kinase 5. calmodulin-domain protein kinase CDPK isoform 5 (CPK5) | 0 |
| RefSeq | XP_002467582.1 | calcium-dependent protein kinase 23 [Sorghum bicolor] | 0 |
| P53682 | Calcium-dependent protein kinase 23 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK23 PE=1 SV=2 | 0 | |
| TrEMBL | C5WTL5 | Calcium-dependent protein kinase 24 OS=Sorghum bicolor OX=4558 GN=SORBI_3001G313100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3068, BH01.3416, CH01.3657 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G300300 |
| Poaceae | Zea mays | 1 | Zm00001eb022180_P001 |