Basic Information
Locus ID:
gene-BS78_01G299200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 36567459 | 36568337 | - | gene-BS78_01G299200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 15,350.22 Da | 39.10 | 98.17 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01806 | Ubl_NEDD8 | 65 | 138 | 6.39573E-37 | IPR038738 |
| Pfam | PF00240 | Ubiquitin family | 65 | 136 | 5.3E-21 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 64 | 138 | 2.99E-23 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 60 | 141 | 1.7E-26 | - |
| SMART | SM00213 | ubq_7 | 63 | 134 | 1.4E-21 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 63 | 138 | 23.070246 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 89 | 114 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 115 | 136 | 4.0E-13 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 73 | 93 | 4.0E-13 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 94 | 114 | 4.0E-13 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31340.1 | related to ubiquitin 1. Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. | 0 |
| RefSeq | XP_025798259.1 | NEDD8-like [Panicum hallii] | 0 |
| Q54XV3 | Ubiquitin-like protein NEDD8 OS=Dictyostelium discoideum OX=44689 GN=nedd8 PE=3 SV=2 | 0 | |
| TrEMBL | A0A2T7CAQ8 | Ubiquitin-like domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G414700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plantaginaceae | Plantago ovata | 1 | Pov_00018702 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3052, BH01.3399, CH01.3639 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G299200 |