Basic Information
Locus ID:
gene-BS78_01G297300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 36341844 | 36347043 | + | gene-BS78_01G297300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 46,982.43 Da | 44.37 | 102.90 | 0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 23 | 431 | 4.67416E-42 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 11 | 393 | 1.6E-24 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 428 | 2.49E-34 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 5 | 434 | 2.7E-34 | IPR036259 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 72 | 5.7E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 377 | 400 | 5.7E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 317 | 338 | 5.7E-5 | IPR001958 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 234 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_039828104.1 | hippocampus abundant transcript 1 protein-like [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0MRF0 | MFS domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG467200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology