Basic Information
Locus ID:
gene-BS78_01G294200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 36045756 | 36051065 | + | gene-BS78_01G294200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 99,009.11 Da | 46.86 | 82.37 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 40 | 195 | 3.19009E-35 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 822 | 863 | 7.93077E-23 | - |
| Pfam | PF00069 | Protein kinase domain | 531 | 734 | 7.8E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 819 | 889 | 1.5E-17 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 509 | 794 | 1.48E-66 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 61 | 185 | 5.11E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 817 | 887 | 1.59E-21 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 35 | 167 | 2.1E-8 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 817 | 891 | 5.9E-26 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 603 | 810 | 1.1E-44 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 510 | 602 | 4.2E-28 | - |
| SMART | SM00220 | serkin_6 | 530 | 791 | 2.1E-28 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 821 | 884 | 5.2E-24 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 530 | 797 | 34.49192 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 817 | 891 | 28.750292 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 648 | 660 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 536 | 557 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 326 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| Coils | Coil | Coil | 447 | 467 | - | - |
| Coils | Coil | Coil | 363 | 383 | - | - |
| Coils | Coil | Coil | 405 | 439 | - | - |
| Coils | Coil | Coil | 482 | 502 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_004986828.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A368SNI5 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=SETIT_9G332800v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology