Basic Information
Locus ID:
gene-BS78_01G288100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
atg2484-1,g2484-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 35458750 | 35471548 | + | gene-BS78_01G288100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 225,135.05 Da | 53.76 | 63.40 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05641 | Agenet domain | 1617 | 1676 | 5.4E-11 | IPR008395 |
| SMART | SM00743 | agenet_At_2 | 1612 | 1673 | 0.45 | IPR014002 |
| SMART | SM00743 | agenet_At_2 | 1701 | 1760 | 3.0E-8 | IPR014002 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1211 | 1251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1937 | 1993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2044 | 2068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2093 | 2107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1807 | 1822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1057 | 1100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1057 | 1080 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2004 | 2024 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 852 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1883 | 2107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 659 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1914 | 1931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1211 | 1232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1533 | 1582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1768 | 1822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 736 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1768 | 1787 | - | - |
| Coils | Coil | Coil | 1456 | 1476 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17330.3 | - | 0 |
| RefSeq | XP_025794830.1 | uncharacterized protein LOC112875259 isoform X5 [Panicum hallii] | 0 |
| F4JP43 | Protein SWOLLEN 1 OS=Arabidopsis thaliana OX=3702 GN=SWO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8I3Z5 | Agenet domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G386600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23346, jg37281 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1982 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004020 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24173, Sbi_jg8012 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12028 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010764 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52382, Sgl57676 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007783, gene:ENSEOMG00000022617 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004530, CQ.Regalona.r1.5BG0004950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142480 |
| Apiaceae | Apium graveolens | 3 | Ag6G00602, Ag6G01712, Ag8G00642 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005380, COCNU_10G003770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711651, gene-LOC103716542 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3319.V1.1, AsparagusV1_10.788.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G25793, Ftri14G05894, Ftri16G00636 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G17330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072700.2N, BniB05g019060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0054 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g03800, gene.Cymno18g03850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04750 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004065, Pov_00004184 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08381, Lb2G08382, Lb2G08400 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2920, BH01.3267, CH01.3497, CH09.628, CH09.629 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116460, gene-QOZ80_2BG0170190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0058290.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G010060, Oco20G009870 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G288100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503187 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G027900, Chr09G004840, Chr13G020000, Chr15G018950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G374200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG033390, gene_TRIDC1BG038740 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G221100.3, TraesCS1B02G234400.4 ... |
| Poaceae | Zea mays | 2 | Zm00001eb023270_P004, Zm00001eb391270_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36325, nbis-gene-37989 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12904, Zma_g15674 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3240, evm.TU.LG10.935, evm.TU.LG16.358 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.363, evm.TU.Scaffold_16_RagTag.341 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17996, nbisL1-mrna-22591 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12293, nbisL1-mrna-12294 |
| Rhizophoraceae | Ceriops zippeliana | 5 | nbisL1-mrna-20188, nbisL1-mrna-20189, nbisL1-mrna-8356 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.152, evm.TU.utg000022l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014378, Maker00018688 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16152, nbisL1-mrna-3429 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10731, nbisL1-mrna-6533 |
| Salicaceae | Populus euphratica | 2 | populus_peu03006, populus_peu33890 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635126 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027921 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16277_chr06_-, STRG.23931_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3811, TC09G0347 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19210.v3.1 |