Basic Information
Locus ID:
gene-BS78_01G281500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 34594754 | 34635125 | + | gene-BS78_01G281500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 470,664.84 Da | 42.68 | 88.50 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4067 | 4155 | 8.5E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2198 | 2344 | 7.0E-9 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3186 | 3342 | 1.6E-10 | IPR009543 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 372 | 1.1E-64 | IPR031646 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 4.0E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1982 | 2121 | 9.0E-14 | IPR009291 |
| Pfam | PF00169 | PH domain | 791 | 899 | 4.8E-6 | IPR001849 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 555 | 768 | 2.6E-34 | IPR031642 |
| SUPERFAMILY | SSF50729 | PH domain-like | 804 | 903 | 5.63E-7 | - |
| ProSiteProfiles | PS50003 | PH domain profile. | 788 | 900 | 7.376801 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1042 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021318346.1 | uncharacterized protein LOC8058057 [Sorghum bicolor] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6D9G4 | Putative vacuolar protein sorting-associated protein 13A OS=Zea mays OX=4577 GN=vps13A_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology