Basic Information
Locus ID:
gene-BS78_01G281100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 34557522 | 34559603 | - | gene-BS78_01G281100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 40,356.89 Da | 73.14 | 77.46 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 163 | 206 | 4.99035E-19 | - |
| Pfam | PF13639 | Ring finger domain | 163 | 206 | 3.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 161 | 212 | 3.93E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 211 | 9.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 164 | 205 | 5.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 164 | 206 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 311 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G23980.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002467469.1 | E3 ubiquitin-protein ligase Os03g0188200 [Sorghum bicolor] | 0 |
| Q8GW38 | RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811MGP7 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2529 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.2854, BH01.3191, CH01.3427 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0117160, gene-QOZ80_2BG0170840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057210.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012769, gene-QYE76_012817 |
| Poaceae | Oryza coarctata | 2 | Oco19G010540, Oco20G010360 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G281100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005420, Chr13G019420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G366200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032510, gene_TRIDC1BG037800 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G215100.1.cds1, TraesCS1B02G228600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb024020_P001, Zm00001eb390730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36411, nbis-gene-38050 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12941, Zma_g15712 |