halophFGD

Basic Information

Locus ID: gene-BS78_01G280500

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	34483132	34486147	-	gene-BS78_01G280500

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.32	43,927.81 Da	47.59	87.08	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06222	RNase_H_like	226	336	7.53858E-14	IPR044730
Pfam	PF13456	Reverse transcriptase-like	238	337	1.3E-9	IPR002156
SUPERFAMILY	SSF53098	Ribonuclease H-like	225	337	7.33E-5	IPR012337
Gene3D	G3DSA:3.30.420.10	-	224	344	1.1E-8	IPR036397

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G43822.1	Pentatricopeptide repeat (PPR) superfamily protein.
RefSeq	XP_051221962.1	uncharacterized protein LOC127340226 [Lolium perenne]
Swiss-Prot	Q6NPG7	Uncharacterized protein At5g43822 OS=Arabidopsis thaliana OX=3702 GN=At5g43822 PE=2 SV=1
TrEMBL	A0A453QL43	RNase H domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	1	Sgl49718
Plantaginaceae	Plantago ovata	1	Pov_00031856
Poaceae	Echinochloa crus-galli	1	CH04.2023
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0085260.1.CDS1 ... HORVU.MOREX.r3.5HG0516130.1.CDS1, HORVU.MOREX.r3.6HG0626540.1.CDS1, HORVU.MOREX.r3.7HG0645620.1.CDS1, HORVU.MOREX.r3.7HG0694690.1.CDS1
Poaceae	Lolium multiflorum	36	gene-QYE76_000856, gene-QYE76_009072, gene-QYE76_009957 ... gene-QYE76_014143, gene-QYE76_015526, gene-QYE76_015837, gene-QYE76_016535, gene-QYE76_018047, gene-QYE76_018914, gene-QYE76_019794, gene-QYE76_031487, gene-QYE76_032162, gene-QYE76_033918, gene-QYE76_035062, gene-QYE76_037263, gene-QYE76_044199, gene-QYE76_045056, gene-QYE76_048244, gene-QYE76_048513, gene-QYE76_053238, gene-QYE76_054544, gene-QYE76_060332, gene-QYE76_060514, gene-QYE76_061128, gene-QYE76_061638, gene-QYE76_062186, gene-QYE76_062722, gene-QYE76_062967, gene-QYE76_065340, gene-QYE76_065847, gene-QYE76_065942, gene-QYE76_066541, gene-QYE76_067875, gene-QYE76_068203, gene-QYE76_069220, gene-QYE76_069367
Poaceae	Paspalum vaginatum	3	gene-BS78_01G280500, gene-BS78_06G115900 ... gene-BS78_07G117000
Poaceae	Puccinellia tenuiflora	16	Pt_Chr0101004, Pt_Chr0102007, Pt_Chr0105198, Pt_Chr0202515 ... Pt_Chr0203362, Pt_Chr0205562, Pt_Chr0206241, Pt_Chr0206306, Pt_Chr0206411, Pt_Chr0302928, Pt_Chr0400498, Pt_Chr0401264, Pt_Chr0401765, Pt_Chr0502753, Pt_Chr0502874, Pt_Chr0600358
Poaceae	Sporobolus alterniflorus	1	Chr09G023650
Poaceae	Thinopyrum elongatum	3	Tel4E01G032600, Tel4E01G032700, Tel6E01G605700
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG017790, gene_TRIDC1BG021710 ... gene_TRIDC2BG011360, gene_TRIDC3AG007990, gene_TRIDC3BG016900, gene_TRIDC4BG005560, gene_TRIDC4BG036510, gene_TRIDC4BG063810, gene_TRIDC5AG000970, gene_TRIDC5BG036640, gene_TRIDC6BG019370, gene_TRIDC7AG030060
Poaceae	Triticum aestivum	1	TraesCS7B02G061000.1.cds1
Poaceae	Zoysia japonica	1	nbis-gene-25144
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g00920