Basic Information
Locus ID:
gene-BS78_01G276100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 34035462 | 34040539 | - | gene-BS78_01G276100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 82,681.04 Da | 53.77 | 66.45 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 264 | 561 | 3.3E-48 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 258 | 563 | 4.91E-80 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 259 | 565 | 1.8E-81 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 263 | 564 | 46.62653 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 505 | 524 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 619 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 719 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 662 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 659 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 135 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G46740.1 | ubiquitin-specific protease 21. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_025791949.1 | uncharacterized protein LOC112873146 [Panicum hallii] | 0 |
| Q9FIQ1 | Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis thaliana OX=3702 GN=UBP21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7C9F3 | USP domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G386300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.2801, BH01.3132, CH01.3379 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G276100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G027010, Chr15G018120 |
| Poaceae | Zea mays | 1 | Zm00001eb390390_P002 |