Basic Information
Locus ID:
gene-BS78_01G274800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33808680 | 33810694 | + | gene-BS78_01G274800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 22,864.88 Da | 52.17 | 80.56 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 144 | 206 | 2.151E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 68 | 129 | 6.1E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 142 | 205 | 2.5E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 54 | 205 | 6.0E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 133 | 212 | 1.0E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 33 | 132 | 5.4E-22 | - |
| SMART | SM00054 | efh_1 | 144 | 172 | 2.0E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 68 | 96 | 4.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 180 | 208 | 4.0E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 104 | 132 | 0.28 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 140 | 175 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 100 | 135 | 9.241175 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 176 | 211 | 13.118635 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 64 | 99 | 13.760229 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 189 | 201 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 113 | 125 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 153 | 165 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 77 | 89 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 62 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | NP_001152651.1 | Probable calcium-binding protein CML11 [Zea mays] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | B6UHC3 | Calmodulin OS=Zea mays OX=4577 GN=100286292 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology