Basic Information
Locus ID:
gene-BS78_01G270100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33323719 | 33325883 | + | gene-BS78_01G270100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 46,519.96 Da | 58.27 | 39.46 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 127 | 171 | 1.31406E-28 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 128 | 169 | 2.1E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 174 | 1.64E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 181 | 7.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 169 | 3.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 170 | 13.654765 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 144 | 153 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025792922.1 | uncharacterized protein LOC112874004 [Panicum hallii] | 0 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5UU01 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022589 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2747, BH01.3079 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118630, gene-QOZ80_2BG0172380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0053920.2.CDS3 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012989 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G270100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503437, Pt_Chr0503483 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021590, Chr09G006510, Chr13G018190, Chr15G017590 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030050, gene_TRIDC1BG035550 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198000.1, TraesCS1B02G212700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025340_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39354 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13020 |