Basic Information
Locus ID:
gene-BS78_01G266600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 32502959 | 32519784 | + | gene-BS78_01G266600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 80,224.73 Da | 46.52 | 89.24 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 282 | 418 | 6.55314E-70 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 73 | 281 | 5.66155E-129 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 94 | 261 | 1.1E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 311 | 408 | 1.9E-14 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 421 | 476 | 1.4E-10 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 130 | 425 | 9.6E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 282 | 485 | 1.2E-61 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 486 | 586 | 1.2E-21 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 607 | 683 | 4.2E-12 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 47 | 281 | 5.4E-90 | IPR027417 |
| SMART | SM00487 | ultradead3 | 87 | 290 | 6.3E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 328 | 409 | 9.0E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 84 | 497 | 2.5E-157 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 99 | 274 | 23.11532 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 605 | 687 | 9.536875 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 299 | 451 | 19.506706 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 713 | - | - |
| Coils | Coil | Coil | 601 | 628 | - | - |
| Coils | Coil | Coil | 4 | 24 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021305540.1 | mediator of RNA polymerase II transcription subunit 34 [Sorghum bicolor] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MYA5 | ATP-dependent DNA helicase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS8087 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology