Basic Information
Locus ID:
gene-BS78_01G265100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 32149943 | 32151677 | + | gene-BS78_01G265100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 45,612.15 Da | 40.96 | 106.05 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 22 | 64 | 3.8653E-19 | - |
| Pfam | PF04564 | U-box domain | 19 | 90 | 4.1E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 90 | 5.55E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 121 | 414 | 9.3E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 97 | 4.8E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 107 | 413 | 6.5E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 21 | 85 | 1.9E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 17 | 92 | 33.624271 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_025797419.1 | U-box domain-containing protein 21-like [Panicum hallii] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5UUL2 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022473 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology