Basic Information
Locus ID:
gene-BS78_01G262000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 31340297 | 31346893 | + | gene-BS78_01G262000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 50,851.44 Da | 55.30 | 87.42 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 18 | 54 | 2.5E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 128 | 1.96E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 56 | 3.0E-8 | - |
| SMART | SM00256 | fbox_2 | 15 | 57 | 2.8E-4 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 424 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004983399.1 | uncharacterized protein LOC101773088 [Setaria italica] | 0 |
| TrEMBL | A0A3L6TJ63 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G46380 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2656, BH01.3005 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G262000 |