Basic Information
Locus ID:
gene-BS78_01G261000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 31159693 | 31200717 | + | gene-BS78_01G261000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 111,834.31 Da | 36.85 | 85.37 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 46 | 323 | 1.40975E-175 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 47 | 359 | 7.7E-94 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 364 | 454 | 9.5E-16 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 890 | 995 | 4.7E-9 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 611 | 807 | 1.1E-34 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 363 | 457 | 3.27E-24 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 456 | 998 | 3.45E-127 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 43 | 361 | 6.04E-109 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 607 | 856 | 3.3E-77 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 407 | 463 | 3.9E-18 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 472 | 583 | 7.4E-26 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 328 | 406 | 1.2E-28 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 876 | 998 | 1.4E-32 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 46 | 327 | 3.0E-117 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 364 | 438 | 4.3E-17 | IPR015341 |
| Coils | Coil | Coil | 937 | 957 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_021305978.1 | alpha-mannosidase [Sorghum bicolor] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3IMS7 | Alpha-mannosidase OS=Panicum hallii OX=206008 GN=PAHAL_9G343700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology