Basic Information
Locus ID:
gene-BS78_01G260800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 31051805 | 31063849 | + | gene-BS78_01G260800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 112,126.98 Da | 35.30 | 84.65 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 44 | 321 | 5.18804E-175 | - |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 903 | 1008 | 1.7E-9 | IPR041147 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 362 | 454 | 1.4E-16 | IPR015341 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 609 | 821 | 1.4E-52 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 357 | 3.1E-93 | IPR000602 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1011 | 4.39E-148 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 456 | 2.52E-25 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 41 | 359 | 3.69E-109 | IPR011330 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 325 | 5.6E-117 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 470 | 581 | 2.1E-25 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 405 | 460 | 1.4E-18 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 603 | 869 | 7.8E-103 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 404 | 4.3E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 890 | 1011 | 3.2E-34 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 362 | 436 | 3.0E-17 | IPR015341 |
| Coils | Coil | Coil | 950 | 970 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_002464752.1 | alpha-mannosidase [Sorghum bicolor] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MHQ1 | Alpha-mannosidase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS2859 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology