Basic Information
Locus ID:
gene-BS78_01G251500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 26303710 | 26313089 | - | gene-BS78_01G251500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 101,489.42 Da | 43.91 | 75.02 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 439 | 493 | 6.10664E-29 | - |
| CDD | cd04716 | BAH_plantDCM_I | 181 | 306 | 2.24504E-60 | - |
| Pfam | PF01426 | BAH domain | 183 | 304 | 6.5E-14 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 440 | 493 | 4.3E-13 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 502 | 861 | 3.8E-32 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 429 | 501 | 1.26E-15 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 339 | 864 | 1.95E-79 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 438 | 882 | 1.0E-236 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 656 | 830 | 1.0E-236 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 326 | 426 | 2.8E-14 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 127 | 292 | 5.3E-55 | IPR043151 |
| SMART | SM00298 | chromo_7 | 439 | 496 | 2.0E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 182 | 307 | 3.2E-20 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 440 | 494 | 13.824501 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 339 | 871 | 45.76059 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 182 | 307 | 18.281761 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 508 | 520 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 551 | 565 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 340 | 356 | 1.1E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 597 | 610 | 1.1E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 101 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_004983483.1 | DNA (cytosine-5)-methyltransferase 3 [Setaria italica] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368SP18 | Chromomethylase 3 OS=Setaria italica OX=4555 GN=SETIT_9G300300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology