Basic Information
Locus ID:
gene-BS78_01G250700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 26032829 | 26038980 | + | gene-BS78_01G250700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 80,694.01 Da | 46.74 | 79.03 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05381 | CAP_PR-1 | 176 | 312 | 4.97115E-64 | - |
| CDD | cd05381 | CAP_PR-1 | 26 | 162 | 4.53095E-74 | - |
| CDD | cd14066 | STKc_IRAK | 422 | 688 | 9.56007E-99 | - |
| Pfam | PF00188 | Cysteine-rich secretory protein family | 180 | 300 | 4.5E-20 | IPR014044 |
| Pfam | PF00188 | Cysteine-rich secretory protein family | 30 | 150 | 2.1E-19 | IPR014044 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 419 | 686 | 6.1E-47 | IPR001245 |
| SUPERFAMILY | SSF55797 | PR-1-like | 19 | 162 | 7.85E-45 | IPR035940 |
| SUPERFAMILY | SSF55797 | PR-1-like | 177 | 312 | 4.32E-40 | IPR035940 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 402 | 689 | 7.01E-82 | IPR011009 |
| Gene3D | G3DSA:3.40.33.10 | CAP | 19 | 164 | 2.1E-40 | IPR035940 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 379 | 491 | 2.4E-33 | - |
| Gene3D | G3DSA:3.40.33.10 | CAP | 174 | 312 | 3.6E-36 | IPR035940 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 492 | 695 | 2.6E-60 | - |
| SMART | SM00198 | SCP_3 | 174 | 308 | 7.8E-39 | IPR014044 |
| SMART | SM00220 | serkin_6 | 416 | 695 | 2.6E-32 | IPR000719 |
| SMART | SM00198 | SCP_3 | 24 | 158 | 2.5E-53 | IPR014044 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 416 | 695 | 38.802788 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 537 | 549 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 422 | 444 | - | IPR017441 |
| ProSitePatterns | PS01010 | CRISP family signature 2. | 295 | 306 | - | IPR018244 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 117 | 133 | 3.3E-13 | IPR001283 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 45 | 63 | 3.3E-13 | IPR001283 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 93 | 106 | 3.3E-13 | IPR001283 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 295 | 308 | 3.3E-13 | IPR001283 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_037408288.1 | cysteine-rich receptor-like protein kinase 10 isoform X1 [Triticum dicoccoides] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2Z4EIZ7 | Pathogenesis-related protein PR1-RK OS=Triticum urartu OX=4572 GN=PR1-RK PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH07.1728, CH07.1580 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0130770 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g27310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G250700 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G011710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G766100 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G477300.1, TraesCS3D02G472000.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20992 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13506 |