Basic Information
Locus ID:
gene-BS78_01G238400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 21253636 | 21260157 | + | gene-BS78_01G238400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 78,393.57 Da | 43.74 | 81.64 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 423 | 691 | 2.6099E-87 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 72 | 1.5E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 124 | 183 | 2.3E-11 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 419 | 688 | 8.7E-39 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 245 | 2.45E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 400 | 688 | 1.39E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 496 | 712 | 1.8E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 264 | 2.5E-50 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 387 | 494 | 4.4E-26 | - |
| SMART | SM00369 | LRR_typ_2 | 97 | 123 | 68.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 170 | 193 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 194 | 216 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 146 | 169 | 25.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 196 | 218 | 8.096991 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 148 | 170 | 7.065096 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 417 | 691 | 34.421249 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 423 | 446 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 288 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_034576741.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Setaria viridis] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6T9S8 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G253300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology