Basic Information
Locus ID:
gene-BS78_01G227200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 19161975 | 19163425 | + | gene-BS78_01G227200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 15,602.73 Da | 42.26 | 98.11 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 35 | 141 | 8.5E-17 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 143 | 8.16E-23 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 9 | 143 | 2.5E-30 | IPR011333 |
| SMART | SM00225 | BTB_4 | 44 | 141 | 6.0E-6 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 44 | 126 | 14.790675 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_002467205.1 | BTB/POZ and MATH domain-containing protein 1 [Sorghum bicolor] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6SFH5 | Speckle-type POZ protein OS=Panicum miliaceum OX=4540 GN=C2845_PM02G13460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0321680, gene-QOZ80_4AG0321870 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G227200, gene-BS78_05G092100 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G013180 |
| Poaceae | Zea mays | 1 | Zm00001eb166870_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7962 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21111 |