Basic Information
Locus ID:
gene-BS78_01G216100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17908140 | 17911631 | + | gene-BS78_01G216100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 30,015.93 Da | 51.71 | 51.49 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 9.1E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 195 | 253 | 2.9E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 12 | 93 | 2.7E-17 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 84 | 141 | 6.15E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 7 | 82 | 1.05E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 195 | 1.8E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 211 | 2.1E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 219 | 258 | 4.0E-18 | - |
| SMART | SM00184 | ring_2 | 148 | 190 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 83 | 147 | 35.34761 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 191 | 11.766381 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 5 | 81 | 23.17992 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_004982968.1 | E3 ubiquitin-protein ligase RZFP34 isoform X1 [Setaria italica] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | K4ADV3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101765663 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology