Basic Information
Locus ID:
gene-BS78_01G211600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 17364064 | 17373246 | + | gene-BS78_01G211600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 59,698.17 Da | 51.33 | 86.07 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 229 | 522 | 1.55836E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 5.6E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 522 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 480 | 0.0071 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 258 | 1.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 217 | 522 | 2.96E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 522 | 2.3E-58 | IPR015943 |
| SMART | SM00320 | WD40_4 | 306 | 363 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 523 | 7.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 438 | 480 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 434 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 258 | 2.7E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 490 | 522 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 15.053326 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 308 | 12.051043 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 261 | 9.731054 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 24 | 56 | 8.42317 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 267 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 490 | 532 | 11.919224 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_025793452.1 | WD repeat-containing protein WDS homolog [Panicum hallii] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6THS8 | WD repeat-containing protein 26-like OS=Panicum miliaceum OX=4540 GN=C2845_PM01G40540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology