Basic Information
Locus ID:
gene-BS78_01G206400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 16560969 | 16563374 | - | gene-BS78_01G206400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 35,744.06 Da | 43.91 | 96.47 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 100 | 160 | 2.44585E-13 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 169 | 238 | 3.15429E-10 | - |
| Pfam | PF00240 | Ubiquitin family | 20 | 85 | 3.9E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 245 | 314 | 2.8E-10 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 99 | 161 | 6.8E-15 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 169 | 238 | 1.9E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 241 | 314 | 3.91E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 11 | 85 | 2.16E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 90 | 163 | 3.38E-17 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 164 | 239 | 4.98E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 239 | 314 | 5.7E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 166 | 238 | 1.7E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 88 | 165 | 5.1E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 87 | 1.6E-18 | - |
| SMART | SM00213 | ubq_7 | 90 | 162 | 9.6E-11 | IPR000626 |
| SMART | SM00213 | ubq_7 | 18 | 87 | 7.7E-12 | IPR000626 |
| SMART | SM00213 | ubq_7 | 167 | 242 | 3.9E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 243 | 314 | 5.6E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 86 | 16.711828 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 167 | 238 | 15.361754 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 243 | 314 | 13.881027 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 90 | 161 | 16.820705 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 26 | 46 | 4.4E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 47 | 67 | 4.4E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 68 | 89 | 4.4E-10 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_025791654.1 | polyubiquitin-like [Panicum hallii] | 0 |
| P62976 | Polyubiquitin OS=Cricetulus griseus OX=10029 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0MJS7 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_9NG304700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |