Basic Information
Locus ID:
gene-BS78_01G194200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15316998 | 15317989 | + | gene-BS78_01G194200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 31,772.22 Da | 34.16 | 92.15 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 14 | 102 | 1.09702E-13 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 118 | 221 | 2.9E-20 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 117 | 221 | 5.34E-22 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 19 | 106 | 2.13E-20 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 102 | 243 | 2.1E-31 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 15 | 89 | 4.4E-13 | IPR008974 |
| SMART | SM00225 | BTB_4 | 122 | 223 | 7.8E-18 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 122 | 188 | 13.467028 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_039841771.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0TSR3 | BTB domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4KG109800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH01.1971 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0111690 |
| Poaceae | Paspalum vaginatum | 11 | gene-BS78_01G192700, gene-BS78_01G193000, gene-BS78_K188700 ... |