Basic Information
Locus ID:
gene-BS78_01G193000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15158242 | 15159252 | - | gene-BS78_01G193000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 37,652.97 Da | 47.13 | 92.05 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 25 | 145 | 3.99924E-17 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 156 | 259 | 1.7E-20 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 18 | 150 | 1.32E-21 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 154 | 259 | 3.34E-24 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 16 | 146 | 8.6E-19 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 147 | 291 | 9.1E-38 | IPR011333 |
| SMART | SM00061 | math_3 | 15 | 126 | 0.0086 | IPR002083 |
| SMART | SM00225 | BTB_4 | 163 | 261 | 9.2E-21 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 13 | 145 | 12.566675 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 163 | 220 | 14.046124 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_039841771.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0TSR3 | BTB domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4KG109800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH01.1971 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0111690 |
| Poaceae | Paspalum vaginatum | 11 | gene-BS78_01G192700, gene-BS78_01G193000, gene-BS78_K188700 ... |