Basic Information
Locus ID:
gene-BS78_01G154400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11964414 | 11968411 | + | gene-BS78_01G154400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 69,422.47 Da | 47.31 | 90.13 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 1.84318E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 116 | 1.2E-5 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 466 | 2.7E-84 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 117 | 2.51E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 119 | 2.4E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 490 | 85.89019 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 10.737003 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 633 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_025793575.1 | BTB/POZ domain-containing protein NPY4-like [Panicum hallii] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811MFQ1 | BTB/POZ domain-containing protein NPY4 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS3592 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology