Basic Information
Locus ID:
gene-BS78_01G150000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11640738 | 11646804 | - | gene-BS78_01G150000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 56,704.25 Da | 55.38 | 71.38 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 141 | 193 | 2.08883E-26 | - |
| Pfam | PF00412 | LIM domain | 141 | 195 | 4.9E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 290 | 500 | 4.8E-100 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 167 | 224 | 4.5E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 166 | 2.95E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 131 | 199 | 3.1E-15 | - |
| SMART | SM00726 | uim | 41 | 60 | 43.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 140 | 192 | 3.6E-13 | IPR001781 |
| SMART | SM00726 | uim | 72 | 86 | 860.0 | IPR003903 |
| SMART | SM00726 | uim | 90 | 109 | 0.12 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 139 | 199 | 12.4246 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 90 | 109 | 9.424373 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 141 | 175 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 449 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_025794578.1 | protein DA1-related 1-like isoform X1 [Panicum hallii] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7C3J7 | LIM zinc-binding domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G156300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology