Basic Information
Locus ID:
gene-BS78_01G148800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11539072 | 11541785 | + | gene-BS78_01G148800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 30,155.61 Da | 67.34 | 61.36 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 8 | 278 | 3.0E-87 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 170 | 268 | 1.57E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 166 | 281 | 9.3E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 170 | 269 | 26.183363 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_004982377.1 | auxin-responsive protein IAA30 isoform X2 [Setaria italica] | 0 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368SHF4 | Auxin-responsive protein OS=Setaria italica OX=4555 GN=SETIT_9G162900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology