Basic Information
Locus ID:
gene-BS78_01G146900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Uncharacterised MFS-type transporter YbfB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11343927 | 11349634 | - | gene-BS78_01G146900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 60,049.31 Da | 46.86 | 100.91 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00083 | Sugar (and other) transporter | 408 | 550 | 1.0E-12 | IPR005828 |
| Pfam | PF00083 | Sugar (and other) transporter | 130 | 292 | 1.1E-26 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 79 | 550 | 2.09E-64 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 88 | 551 | 4.3E-79 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 94 | 546 | 34.602257 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_039828841.1 | organic cation/carnitine transporter 7-like isoform X1 [Panicum virgatum] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3IJY8 | MFS domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G158900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology